Phylogeny Reconstruction and Functional Constraints in Organellar Genomes: Plastid atpB and rbcL Sequences Versus Animal Mitochondrion

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Phylogeny reconstruction and functional constraints in organellar genomes: plastid atpB and rbcL sequences versus animal mitochondrion.

VINCENT SAVOLAINEN,1 MARK W. CHASE,1 NICOLAS SALAMIN,2 DOUGLAS E. SOLTIS,3 PAMELA S. SOLTIS ,4 ANDRÉS J. LÓPEZ,5 OLIVIER FÉDRIGO,5 AND GAVIN J. P. NAYLOR5 Molecular Systematics Section, Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, TW9 3DS, U.K.; E-mail: [email protected] (V.S.), [email protected] (M.W.C.) Department of Botany, Trinity College, Dublin 2, Ireland; E-mail: salaminn@t...

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A Comparison and Combination of Plastid atpB and rbcL Gene Sequences for Inferring Phylogenetic Relationships within Orchidaceae

Parsimony analyses of DNA sequences from the plastid genes atpB and rbcL were completed for 173 species of Orchidaceae (representing 150 different genera) and nine genera from outgroup families in Asparagales. The atpB tree topology is similar to the rbcL tree, although the atpB data contain less homoplasy and provide greater jackknife support than rbcL alone. In combination, the two-gene tree ...

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Major Clades of Australasian Rutoideae (Rutaceae) Based on rbcL and atpB Sequences

BACKGROUND Rutaceae subfamily Rutoideae (46 genera, c. 660 species) is diverse in both rainforests and sclerophyll vegetation of Australasia. Australia and New Caledonia are centres of endemism with a number of genera and species distributed disjunctly between the two regions. Our aim was to generate a high-level molecular phylogeny for the Australasian Rutoideae and identify major clades as a ...

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Phylogeny of Agavaceae Based on ndhF, rbcL, and its Sequences

Great advances have been made in our understanding of the phylogeny and classification of Agavaceae in the last 20 years. In older systems Agavaceae were paraphyletic due to overemphasis of ovary position or habit. Discovery of a unique bimodal karyotype in Agave and Yucca eventually led to a reexamination of concepts and relationships in all the lilioid monocots, which continues to the present...

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Foreign Plastid Sequences in Plant Mitochondria are Frequently Acquired Via Mitochondrion-to-Mitochondrion Horizontal Transfer

Angiosperm mitochondrial genomes (mtDNA) exhibit variable quantities of alien sequences. Many of these sequences are acquired by intracellular gene transfer (IGT) from the plastid. In addition, frequent events of horizontal gene transfer (HGT) between mitochondria of different species also contribute to their expanded genomes. In contrast, alien sequences are rarely found in plastid genomes. Mo...

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ژورنال

عنوان ژورنال: Systematic Biology

سال: 2002

ISSN: 1076-836X,1063-5157

DOI: 10.1080/10635150290102348